Friday, August 29. 2008On Eggs and CitationsFailing to observe a platypus laying eggs is not a demonstration that the platypus does not lay eggs. You have to actually observe the provenance, ab ovo, of those little newborn platypusses, if you want to demonstrate that they are not being engendered by egg-laying. Failing to observe a significant OA citation Advantage within a year of publication (or a year and a half -- or longer, as the case may be) with randomized OA does not demonstrate that the many studies that do observe a significant OA citation Advantage with nonrandomized OA are simply reporting self-selection artifacts (i.e., selective provision of OA for the more highly citable articles.) To demonstrate the latter, you first have to replicate the OA citation Advantage with nonrandomized OA (on the same or comparable sample) and then demonstrate that randomized OA (on the same or comparable sample) eliminates that OA citation Advantage (on the same or comparable sample). Otherwise, you are simply comparing apples and oranges (or eggs and expectations, as the case may be) in reporting a failure to observe a significant OA citation Advantage in a first-year (or first 1.5-year) sample with randomized OA -- along with a failure to observe a significant OA citation Advantage for nonrandomized OA either, for the same sample (on the grounds that the nonrandomized OA subsample was too small): The many reports of the nonrandomized OA Citation Advantage are based on samples that were sufficiently large, and on a sufficiently long time-scale (almost never as short as a year) to detect a significant OA Citation Advantage. A failure to observe a significant effect with small, early samples, on short time-scales -- whether randomized or nonrandomized -- is simple that: a failure to observe a significant effect: Keep testing till the size and duration of your sample of randomized and nonrandomized OA is big enough to test your self-selection hypothesis (i.e., comparable with the other studies that have detected the effect). Meanwhile, note that (as other studies have likewise found), although a year proved too short to observe a significant OA citation Advantage for randomized (or nonrandomized) OA, it did prove long enough to observe a significant OA download Advantage for randomized OA -- and that other studies have also reported that early download advantages correlate significantly with later significant citation advantages. Just as mating more is likely to lead to more progeny for platypusses (by whatever route) than mating less, so accessing and downloading more is likely to lead to more citations for papers than accessing and downloading less. Stevan Harnad American Scientist Open Access Forum Monday, August 25. 2008Confirmation Bias and the Open Access Advantage: Some Methodological Suggestions for Davis's Citation Study
SUMMARY: Davis (2008) analyzes citations from 2004-2007 in 11 biomedical journals. For 1,600 of the 11,000 articles (15%), their authors paid the publisher to make them Open Access (OA). The outcome, confirming previous studies (on both paid and unpaid OA), is a significant OA citation Advantage, but a small one (21%, 4% of it correlated with other article variables such as number of authors, references and pages). The author infers that the size of the OA advantage in this biomedical sample has been shrinking annually from 2004-2007, but the data suggest the opposite. In order to draw valid conclusions from these data, the following five further analyses are necessary:(1) The current analysis is based only on author-choice (paid) OA. Free OA self-archiving needs to be taken into account too, for the same journals and years, rather than being counted as non-OA, as in the current analysis.Davis proposes that an author self-selection bias for providing OA to higher-quality articles (the Quality Bias, QB) is the primary cause of the observed OA Advantage, but this study does not test or show anything at all about the causal role of QB (or of any of the other potential causal factors, such as Accessibility Advantage, AA, Competitive Advantage, CA, Download Advantage, DA, Early Advantage, EA, and Quality Advantage, QA). The author also suggests that paid OA is not worth the cost, per extra citation. This is probably true, but with OA self-archiving, both the OA and the extra citations are free. The Davis (2008) preprint is an analysis of the citations from years c. 2004-2007 in 11 biomedical journals: c. 11,000 articles, of which c. 1,600 (15%) were made Open Access (OA) through “Author Choice” (AC-OA): author chooses to pay publisher for OA). Author self-archiving (SA-OA) articles from the same journals was not measured.Comments on: Davis, P.M. (2008) Author-choice open access publishing in the biological and medical literature: a citation analysis. Journal of the American Society for Information Science and Technology (JASIST) (in press) http://arxiv.org/pdf/0808.2428v1 The result was a significant OA citation advantage (21%) over time, of which 4% was correlated with variables other than OA and time (number of authors, pages, references; whether article is a Review and has a US co-author). This outcome confirms the findings of numerous previous studies (some of them based on far larger samples of fields, journals, articles and time-intervals) of an OA citation advantage (ranging from 25%-250%) in all fields, across a 10-year range (Hitchcock 2008). The preprint also states that the size of the OA advantage in this biomedical sample diminishes annually from 2004-2007. But the data seem to show the opposite: that as an article gets older, and its cumulative citations grow, its absolute and relative OA advantage grow too. The preprint concludes, based on its estimate of the size of the OA citation Advantage, that AC-OA is not worth the cost, per extra citation. This is probably true -- but with SA-OA the OA and the extra citations can be had at no cost at all. The paper is accepted for publication in JASIST. It is not clear whether the linked text is the unrefereed preprint, or the refereed, revised postprint. On the assumption that it is the unrefereed preprint, what follows is an extended peer commentary with recommendations on what should be done in revising it for publication. (It is very possible, however, that some or all of these revisions were also recommended by the JASIST referees and that some of the changes have already been made in the published version.) As it stands currently, this study (i) confirms a significant OA citation Advantage, (ii) shows that it grows cumulatively with article age and (iii) shows that it is correlated with several other variables that are correlated with citation counts. Although the author argues that an author self-selection bias for preferentially providing OA to higher-quality articles (the Quality Bias, QB) is the primary causal factor underlying the observed OA Advantage, in fact this study does not test or show anything at all about the causal role of QB (or of any of the other potential causal factors underlying the OA Advantage, such as Accessibility Advantage, AA, Competitive Advantage, CA, Download Advantage, DA, Early Advantage, EA, and Quality Advantage, QA; Hajjem & Harnad 2007b). The following 5 further analyses of the data are necessary. The size and pattern of the observed results, as well as their interpretations, could all be significantly altered (as well as deepened) by their outcome: (1) The current analysis is based only on author-choice (paid) OA. Free author self-archiving OA needs to be taken into account too, for the same journals and years, rather than being counted as non-OA, as in the current analysis.Commentary on the text of the preprint: “ABSTRACT… there is strong evidence to suggest that the open access advantage is declining by about 7% per year, from 32% in 2004 to 11% in 2007”It is not clearly explained how these figures and their interpretation are derived, nor is it reported how many OA articles there were in each of these years. The figures appear to be based on a statistical interaction between OA and article-age in a multiple regression analysis for 9 of the 11 journals in the sample. (a) The data from PNAS, the largest and highest-impact journal, are excluded from this analysis. (b) The many variables included in the (full) multiple regression equation (across journals) omit one of the most obvious ones: journal impact factor. (c) OA articles that are self-archived rather than paid author-choice are not identified and included as OA, hence their citations are counted as being non-OA. (d) The OA/age interaction is not based on yearly citations after a fixed interval for each year, but on cumulative retrospective citations in June 2008. The natural interpretation of Figure 1 accordingly seems to be the exact opposite of the one the author makes: Not that the size of the OA Advantage shrinks from 2004-2007, but that the size of the OA Advantage grows from 2007-2004 (as articles get older and their citations grow). Not only do cumulative citations grow for both OA and non-OA articles from year 2007 articles to year 2004 articles, but the cumulative OA advantage increases (by about 7% per year, even on the basis of this study’s rather slim and selective data and analyses). This is quite natural, as not only do citations grow with time, but the OA Advantage -- barely detectable in the first year, being then based on the smallest sample and the fewest citations -- emerges with time. “See Craig et al. [2007] for a critical review of the literature [on the OA citation advantage]”Craig et al’s rather slanted 2007 review is the only reference to previous findings on the OA Advantage cited by the Davis preprint (Harnad 2007a). Craig et al. had attempted to reinterpret the many times replicated positive finding of an OA citation advantage, on the basis of 4 negative findings (Davis & Fromerth, 2007; Kurtz et al., 2005; Kurtz & Henneken, 2007; Moed, 2007), in maths, astronomy and condensed matter physics, respectively. Apart from Davis’s own prior study, these studies were based mainly on preprints that were made OA well before publication. The observed OA advantage consisted mostly of an Early Access Advantage for the OA prepublication preprint, plus an inferred Quality Bias (QB) on the part of authors towards preferentially providing OA to higher quality preprints (Harnad 2007b). The Davis preprint does not cite any of the considerably larger number of studies that have reported large and consistent OA advantages for postprints, based on many more fields, some of them based on far larger samples and longer time intervals (Hitchcock 2008). Instead, Davis focuses rather single-mindedly on the hypothesis that most or all of the OA Advantage is the result for the self-selection bias (QB) toward preferentially making higher-quality (hence more citeable) articles OA: “authors selectively choose which articles to promote freely… [and] highly cited authors disproportionately choose open access venues”It is undoubtedly true that better authors are more likely to make their articles OA, and that authors in general are more likely to make their better articles OA. This Quality or “Self-Selection” Bias (QB) is one of the probable causes of the OA Advantage. However, no study has shown that QB is the only cause of the OA Advantage, nor even that it is the biggest cause. Three of the studies cited (Kurtz et al., 2005; Kurtz & Henneken, 2007; Moed, 2007) showed that another causal factor is Early Access (EA: providing OA earlier results in more citations). There are several other candidate causal factors in the OA Advantage, besides QB and EA (Hajjem & Harnad 2007b):There is the Download (or Usage) Advantage (DA): OA articles are downloaded significantly more, and this early DA has also been shown to be predictive of a later citation advantage in Physics (Brody et al. 2006). There is a Competitive Advantage (CA): OA articles are in competition with non-OA articles, and to the extent that OA articles are relatively more accessible than non-OA articles, they can be used and cited more. Both QB and CA, however, are temporary components of the OA advantage that will necessarily shrink to zero and disappear once all research is OA. EA and DA, in contrast, will continue to contribute to the OA advantage even after universal OA is reached, when all postprints are being made OA immediately upon publication, compared to pre-OA days (as Kurtz has shown for Astronomy, which has already reached universal post-publication OA). There is an Accessibility Advantage (AA) for those users whose institutions do not have subscription access to the journal in which the article appeared. AA too (unlike CA) persists even after universal OA is reached: all articles then have AA's full benefit. And there is at least one more important causal component in the OA Advantage, apart from AA, CA, DA and QB, and that is a Quality Advantage (QA), which has often been erroneously conflated with QB (Quality Bias): Ever since Lawrence’s original study in 2001, the OA Advantage can be estmated in two different ways: (1) by comparing the average citations for OA and non-OA articles (log citation ratios within the same journal and year, or regression analyses like Davis’s) and (2) by comparing the proportion of OA articles in different “citation brackets” (0, 1, 2, 3-4, 5-8, 9-16, 17+ citations). In method (2), the OA Advantage is observed in the form of an increase in the proportion of OA articles in the higher citation brackets. But this correlation can be explained in two ways. One is QB, which is that authors are more likely to make higher-quality articles OA. But it is also at least as plausible that higher-quality articles benefit more from OA! It is already known that the top c. 10-20% of articles receive c. 80-90% of all citations (Seglen’s 1992 “skewness of science”). It stands to reason, then, that when all articles are made OA, it is the top 20% of articles that are most likely to be cited more: Not all OA articles benefit from OA equally, because not all articles are of equally citable quality. Hence both QB and QA are likely to be causal components in the OA Advantage, and the only way to tease them apart and estimate their individual contributions is to control for the QB effect by imposing the OA instead of allowing it to be determined by self-selection. We (Gargouri, Hajjem, Gingras, Carr & Harnad, in prep.) are completing such a study now, comparing mandated and unmandated OA; and Davis et al 2008 have just published another study on randomized OA for 11 journals: “In the first controlled trial of open access publishing where articles were randomly assigned to either open access or subscription-access status, we recently reported that no citation advantage could be attributed to access status (Davis, Lewenstein, Simon, Booth, & Connolly, 2008)”This randomized OA study by Davis et al. was very welcome and timely, but it had originally been announced to cover a 4-year period, from 2007-2010, whereas it was instead prematurely published in 2008, after only one year. No OA advantage at all was observed in that 1-year interval, and this too agrees with the many existing studies on the OA Advantage, some based on far larger samples of journals, articles and fields: Most of those studies (none of them randomized) likewise detected no OA citation advantage at all in the first year: It is simply too early. In most fields, citations take longer than a year to be made, published, ISI-indexed and measured, and to make any further differentials (such as the OA Advantage) measurable. (This is evident in Davis’s present preprint too, where the OA advantage is barely visible in the first year (2007).) The only way the absence of a significant OA advantage in a sample with randomized OA can be used to demonstrate that the OA Advantage is only or mostly just a self-selection bias (QB) is by also demonstrating the presence of a significant OA advantage in the same (or comparable) sample with nonrandomized (i.e., self-selected) OA. But Davis et al. did not do this control comparison (Harnad 2008b). Finding no OA Advantage with randomized OA after one year merely confirms the (widely observed) finding that one year is usually too early to detect any OA Advantage; but it shows nothing whatsoever about self-selection QB. “we examine the citation performance of author-choice open access”It is quite useful and interesting to examine citations for OA and non-OA articles where the OA is provided through (self-selected) “Author-Choice” (i.e., authors paying the publisher to make the article OA on the publisher’s website). Most prior studies of the OA citation Advantage, however, are based on free self-archiving by authors on their personal, institutional or central websites. In the bigger studies, a robot trawls the web using ISI bibliographic metadata to find which articles are freely available on the web (Hajjem et al. 2005). Hence a natural (indeed essential) control test that has been omitted from Davis’s current author-choice study – a test very much like the control test omitted from the Davis et al randomized OA study – is to identify the articles in the same sample that were made OA through author self-archiving. If those articles are identified and counted, that not only provides an estimate of the relative uptake of author-choice OA vs OA self-archiving in the same sample interval, but it allows a comparison of their respective OA Advantages. More important, it corrects the estimate of an OA Advantage based on author-choice OA alone: For, as Davis has currently done the analysis, any OA Advantage from OA self-archiving in this sample would in fact reduce the estimate of the OA Advantage based on author-choice OA (mistakenly counting as non-OA the articles and citation-counts for self-archived OA articles) “METHODS… The uptake of the open access author-choice programs for these [11] journals ranged from 5% to 22% over the dates analyzed”Davis’s preprint does not seem to provide the data – either for individual journals or for the combined totals – on the percentage of author-choice OA (henceforth AC-OA) by year, nor on the relation between the proportion uptake of AC-OA and the size of the OA Advantage, by year. As Davis has been careful to do multiple regression analyses on many of the article-variables that might correlate with citations and OA (article age, number of authors, number of references, etc.), it seems odd not to take into account the relation between the size of the AC-OA Advantage and the degree of uptake of AC-OA, by year. The other missing information is the corresponding data for self-archiving OA (henceforth SA-OA). “[For] All of the journals… all articles roll into free access after an initial period [restricted to subscription access only for 12 months (8 journals), 6 months (2 journals) or 24 months (1 journal)]”(This is important in relation to the Early Access (EA) Advantage, which is the biggest contributor to the OA Advantage in the two cited studies by Kurtz on Astronomy. Astronomy has free access to the postprints of all articles in all astronomy journals immediately upon publication. Hence Astronomy has scope for an OA Advantage only through an EA Advantage, arising from the early posting of preprints before publication. The size of the OA Advantage in other fields -- in which (unlike in Astronomy) access to the postprint is restricted to subscribers-only for 6, 12, or 24 months -- would then be the equivalent of an estimate of an “EA Advantage” for those potential users who lack subscription access – i.e., the Accessibility Advantage, AA.) “Cumulative article citations were retrieved on June 1, 2008. The age of the articles ranged from 18 to 57 months”Most of the 11 journals were sampled till December 2007. That would mean that the 2007 OA Advantage was based on even less than one year from publication. “STATISTICAL ANALYSIS… Because citation distributions are known to be heavily skewed (Seglen, 1992) and because some of the articles were not yet cited in our dataset, we followed the common practice of adding one citation to every article and then taking the natural log”(How well did that correct the skewness? If it still was not normal, then citations might have to be dichotomized as a 0/1 variable, comparing, by citation-bracket slices, (1) 0 citations vs 1 or more citations, (2) 0 or 1 vs more than 1, (3) 2 or fewer vs. more than 2, (4) 3 or fewer vs. more than 3… etc.) “For each journal, we ran a reduced [2 predictor] model [article age and OA] and a full [7 predictor] regression model [age, OA; log no. of authors, references, pages; Review; US author]”Both analyses are, of course, a good idea to do, but why was Journal Impact Factor (JIF) not tested as one of the predictor variables in the cross-journal analyses (Hajjem & Harnad 2007a)? Surely JIF, too, correlates with citations: Indeed, the Davis study assumes as much, as it later uses JIF as the multiplier factor in calculating the cost per extra citation for author-choice OA (see below). Analyses by journal JIF citation-bracket, for example, can provide estimates of QA (Quality Advantage) if the OA Advantage is bigger in the higher journal citation-brackets. (Davis’s study is preoccupied with the self-selection QB bias, which it does not and cannot test, but it fails to test other candidate contributors to the OA Advantage that it can test.) (An important and often overlooked logical point should also be noted about the correlates of citations and the direction of causation: The many predictor variables in the multiple regression equations predict not only the OA citation Advantage; they also predict citation counts themselves. It does not necessarily follow from the fact that, say, longer articles are more likely to be cited that article length is therefore an artifact that must be factored out of citation counts in order to get a more valid estimate of how accurately citations measure quality. One possibility is that length is indeed an artifact. But the other possibility is that length is a valid causal factor in quality! If length is indeed an artifact, then longer articles are being cited more just because they are longer, rather than because they are better, and this length bias needs to be subtracted out of citation counts as measures of quality. But if the extra length is a causal contributor to what makes the better articles better, then subtracting out the length effect simply serves to make citation counts a blunter, not a sharper instrument for measuring quality. The same reasoning applies to some of the other correlates of citation counts, as well as their relation to the OA citation Advantage. Systematically removing them all, even if they are not artifactual, systematically divests citation counts of their potential power to predict quality. This is another reason why citation counts need to be systematically validated against other evaluative measures [Harnad 2008a].) “Because we may lack the statistical power to detect small significant differences for individual journals, we also analyze our data on an aggregate level”It is a reasonable, valid strategy, to analyze across journals. Yet this study still persists in drawing individual-journal level conclusions, despite having indicated (correctly) that its sample may be too small to have the power to detect individual-journal level differences (see below). (On the other hand, it is not clear whether all the OA/non-OA citation comparisons were always within-journal, within-year, as they ought to be; no data are presented for the percentage of OA articles per year, per journal. OA/non-OA comparisons must always be within-journal/year comparisons, to be sure to compare like with like.) “The first model includes all 11 journals, and the second omits the Proceedings of the National Academy of Sciences (PNAS), considering that it contributed nearly one-third (32%) of all articles in our dataset”Is this a justification for excluding PNAS? Not only was the analysis done with and without PNAS, but, unlike all the other journals, whose data were all included, for the entire time-span, PNAS data were only included from the first and last six months. Why? PNAS is a very high impact factor journal, with highly cited articles. A study of PNAS alone, with its much bigger sample size, would be instructive in itself – and would almost certainly yield a bigger OA Advantage than the one derived from averaging across all 11 journals (and reducing the PNAS sample size, or excluding PNAS altogether). There can be a QB difference between PNAS and non-PNAS articles (and authors), to be sure, because PNAS publishes articles of higher quality. But a within-PNAS year-by-year comparison of OA and non-OA that yielded a bigger OA Advantage than a within-journal OA/non-OA comparison for lower-quality journals would also reflect the contribution of QA. (With these data in hand, the author should not be so focused on confirming his hypotheses: take the opportunity to falsify them too!) “we are able to control for variables that are well-known to predict future citations [but] we cannot control for the quality of an article”This is correct. One cannot control for the quality of an article; but in comparing within a journal/year, one can compare the size of the OA Advantage for higher and lower impact journals; if the advantage is higher for higher-impact journals, that favors QA over QB. One can also take target OA and non-OA articles (within each citation bracket), and match the title words of each target article with other articles (in the same journal/year): If one examines N-citation OA articles and N-citation non-OA articles, are their title-word-matched (non-OA) control articles equally likely to have N or more citations? Or are the word-matched control articles for N-citation OA articles less likely to have N or more citations than the controls for N-citation non-OA articles (which would imply that the OA has raised the OA article’s citation bracket)? And would this effect be greater in the higher citation brackets than in the lower ones (N = 1 to N = >16)? If one is resourceful, there are ways to control, or at least triangulate on quality indirectly. “spending a fee to make one’s article freely available from a publisher’s website may indicate there is something qualitatively different [about that article]”Yes, but one could probably tell a Just-So story either way about the direction of that difference: paying for OA because one thinks one's article is better, or paying for OA because one thinks one's article worse! Moreover, this is AC-OA, which costs money; the stakes are different with SA-OA, which only costs a few keystrokes. But this analysis omitted to identify or measure SA-OA. “RESULTS…The difference in citations between open access and subscription-based articles is small and non-significant for the majority of the journals under investigation”(1) Compare the above with what is stated earlier: “Because we may lack the statistical power to detect small significant differences for individual journals, we also analyze our data on an aggregate level.” (2) Davis found an OA Advantage across the entire sample of 11 journals, whereas the individual journal samples were too small. Why state this as if it were some sort of an empirical effect? “where only time and open access status are the model predictors, five of the eleven journals show positive and significant open access effects.”(That does not sound too bad, considering that the individual journal samples were small and hence lacked the statistical power to detect small significant differences, and that the PNAS sample was made deliberately small!) “Analyzing all journals together, we report a small but significant increase in article citations of 21%.”Whether that OA Advantage is small or big remains to be seen. The bigger published OA Advantages have been reported on the basis of bigger samples. “Much of this citation increase can be explained by the influence of one journal, PNAS. When this journal is removed from the analysis, the citation difference reduces to 14%.”This reasoning can appeal only if one has a confirmation bias: PNAS is also the journal with the biggest sample (of which only a fraction was used); and it is also the highest impact journal of the 11 sampled, hence the most likely to show benefits from a Quality Advantage (QA) that generates more citations for higher citation-bracket articles. If the objective had not been to demonstrate that there is little or no OA Advantage (and that what little there is is just due to QB), PNAS would have been analyzed more closely and fully, rather than being minimized and excluded. “When other explanatory predictors of citations (number of authors, pages, section, etc.) are included in the full model, only two of the eleven journals show positive and significant open access effects. Analyzing all journals together, we estimate a 17% citation advantage, which reduces to 11% if we exclude PNAS.”In other words partialling out 5 more correlated variables from this sample reduces the residual OA Advantage by 4%. And excluding the biggest, highest-quality journal’s data, reduces it still further. If there were not this strong confirmation bent on the author’s part, the data would be treated in a rather different way: The fact that a journal with a bigger sample enhances the OA Advantage would be treated as a plus rather than a minus, suggesting that still bigger samples might have the power to detect still bigger OA Advantages. And the fact that PNAS is a higher quality journal would also be the basis for looking more closely at the role of the Quality Advantage (QA). (With less of a confirmation bent, OA Self-archiving, too, would have been controlled for, instead of being credited to non-OA.) Instead, the awkward persistence of a significant OA Advantage even after partialling out the effects of so many correlated variables, despite restricting the size of the PNAS sample, and even after removing PNAS entirely from the analysis, has to be further explained away: “The modest citation advantage for author-choice open access articles also appears to weaken over time. Figure 1 plots the predicted number of citations for the average article in our dataset. This difference is most pronounced for articles published in 2004 (a 32% advantage), and decreases by about 7% per year (Supplementary Table S2) until 2007 where we estimate only an 11% citation advantage.”(The methodology is not clearly described. We are not shown the percent OA per journal per year, nor what the dates of the citing articles were, for each cited-article year. What is certain is that a 1-year-old 2007 article differs from a 4-year-old 2004 article not just in its total cumulative citations in June 2008, but in that the estimate of its citations per year is based on a much smaller sample, again reducing the power of the statistic: This analysis is not based on 2005 citations to 2004 articles, plus 2006 citations to 2005 articles, plus 2007 citations to 2006 articles, etc. It is based on cumulative 2004-2008 citations to 2004, 2005, 2006 etc. articles, reckoned in June 2008. 2007 articles are not only younger: they are also more recent. Hence it is not clear what the Age/OA interaction in Table S2 really means: Has (1) the OA advantage for articles really been shrinking across those 4 years, or are citation rates for younger articles simply noisier, because based on smaller citation spans, hence (2) the OA Advantage grows more detectable as articles get older?) From what is described and depicted in Figure 1, the natural interpretation of the Age/OA interaction seems to be the latter: As we move from one-year-old articles (2007) toward four-year-old articles, three things are happening: non-OA citations are growing with time, OA citations are growing with time, and the OA/non-OA Advantage is emerging with time. “[To] calculate… the estimated cost per citation [$400 - $9000]… we multiply the open access citation advantage for each journal (a multiplicative effect) by the impact factor of the journal… Considering [the] strong evidence of a decline of the citation advantage over time, the cost…would be much higher…”Although these costs are probably overestimated (because the OA Advantage is underestimated, and there is no decline but rather an increase) the thrust of these figures is reasonable: It is not worth paying for AC-OA for the sake of the AC-OA Advantage: It makes far more sense to get the OA Advantage for free, through OA Self-Archiving. Note, however, that the potentially informative journal impact factor (JIF) was omitted from the full-model multiple regression equation across journals (#6). It should be tested. So should the percentage OA for each journal/year. And after that the analysis should be redone separately for, say, the four successive JIF quartiles. If adding the JIF to the equation reduces the OA Advantage further, whereas without JIF the OA Advantage increases in each successive quartile, then that implies that a big factor in the OA Advantage is the Quality Advantage (QA). “that we were able to explain some of the citation advantage by controlling for differences in article characteristics… strengthens the evidence that self-selection – not access – is the explanation for the citation advantage… more citable articles have a higher probability of being made freely accessible”Self-selection (QB) is undoubtedly one of the factors in the OA Advantage, but this analysis has not estimated the size of its contribution, relative to many other factors (AA, CA, DA, EA, QA). It has simply shown that some of the same factors that influence citation counts, influence the OA citation Advantage too. By failing to test and control for the Quality Advantage in particular (by not testing JIFs in the full regression equation, by not taking percentage OA per journal/year into account, by restricting the sample-size for the highest impact, largest-sample journal, PNAS, by overlooking OA self-archiving and crediting it to non-OA, by not testing citation-brackets of JIF quartiles), the article needlessly misses the opportunity to analyze the factors contributing to the OA Advantage far more rigorously. “earlier studies [on the OA Advantage] may be showing an early-adopter effect…”This is probably true. And early adopters also have a Competitive Advantage (CA). But with only about 20% OA being provided overall today, the CA is still there, except if it can be demonstrated – as Davis certainly has not demonstrated – that the c. 20% of articles that are being made OA today correspond sufficiently closely to that top 20% of articles that receive 80% of all citations. (Then the OA Advantage would indeed be largely QB.) “authors who deposited their manuscripts in the arXiv tended to be more highly-cited than those who did not”There is some circularity in this, but it is correct to say that this correlation is compatible with both QB and QA, and probably both are contributing factors. But none of the prior studies nor this one actually estimate their relative contributions (nor those of AA, CA, DA and EA). “any relative citation advantage that was enjoyed by early adopters would disappear over time”It is not that CA (Competitive Advantage) disappears simply because time elapses: CA only disappears if the competitors provide OA too! The same is true of QB (Quality Bias), which also disappears once everyone is providing OA. But at 20%, we are nowhere near 100% OA yet, hence there is plenty of scope for a competitive edge. “If a citation advantage is the key motivation of authors to pay open access fees, then the cost/benefit of this decision can be quite expensive for some journals.”This is certainly true, and would be true even if the OA citation Advantage were astronomically big – but the reason it is true is that authors need not pay AC-OA fees for OA at all: they can self-archive for free (and indeed are being increasingly mandated by their funders and institutions to do so). “Randomized controlled trials provide a more rigorous methodology for measuring the effect of access independently of other confounding effects (Davis et al., 2008)… the differences we report in our study… have more likely explained the effect of self-selection (or self-promotion) than of open access per se.”The syntax here makes it a little difficult to interpret, but if what is meant is that Davis et al’s prior study has shown that the OA Advantage found in the present study was more likely to be a result of QB than of QA, AA, CA, DA, or EA, then it has to be replied that that prior study showed nothing of the sort (Harnad 2008b). All it showed was that one cannot detect a significant OA Advantage at all one year after publication when OA is randomized. (The same is true when OA is not randomized.) However, the prior Davis et al. study did find a significant DA (Download Advantage) for OA articles in the first year. And other studies have reported a significant correlation between early downloads and later citations (Brody et al. 2006). So the prior Davis et al. study (1) confirmed the familiar failure to detect the OA Advantage in the first year, and (2) found a significant DA in the first year (probably predictive of a later OA citation Advantage). The present Davis study found (i) a significant OA Advantage, (ii) smallest in the first year (2007), much bigger by the fourth (2004). “Retrospective analysis… our analysis is based on cumulative citations to articles taken at one point in time. Had we tracked the performance of our articles over time – a prospective approach – we would have stronger evidence to bolster our claim that the citation advantage is in decline. Still, we feel that cumulative citation data provides us with adequate inference.”Actually, it would be possible, with a fuller analysis using the ISI database, to calculate not only the citation counts for each cited article, but the dates of the citing articles. So a “prospective” analysis can be done in retrospect. Without performing that analysis, however, the present study does not provide evidence of a decline in the OA Advantage with time, just evidence of an improved signal/noise ratio for measuring the OA Advantage with time. A “prospective” analysis, taking citing dates as well as cited dates into account, would be welcome (and is far more likely to show that the size of the OA Advantage is, if anything, growing, rather than confirming the author’s interpretation, unwarranted on the present data, that it is shrinking). “all of the journals under investigation make their articles freely available after an initial period of time [hence] any [OA Advantage] would be during these initial months in which there exists an access differential between open access and subscription-access articles. We would expect therefore that the effect of open access would therefore be strongest in the earlier years of the life of the article and decline over time. In other words, we would expect our trend (Figure 1) to operate in the reverse direction.”The reasoning here is a bit hard to follow, but the Kurtz studies that Davis cites show that in Astronomy, making preprints OA in the year or so before publication (after which all Astronomy postprints are OA) results in both “a strong EA effect and a strong [QB] effect.” But even in a fast-moving field like Astronomy, the effect is not immediate! There is no way to predict from the data for Astronomy how quickly an EA effect for nonsubscribers during the embargo year in Biomedicine should make itself felt in citations, but it is a safe bet that, as with citation latency itself, and the latency of the OA citation Advantage, the “EmA” (“Embargo Access”) counterpart of the EA effect in access-embargoed Biomedical journals will need a latency of a few years to become detectable. And since Davis’s age/OA interaction, based on static, cumulative, retrospective data, is just as readily interpretable as indicating that OA Advantages require time and sample-size growth in order to occur and be detected, the two patterns are perfectly compatible. “we are at a loss to come up with alternative explanations to explain the monotonic decline in the citation advantage”There is no monotonic decline to explain. Just (a) low power in initial years, (b) cumulative data not analysed to equate citing/cited year spans, (c) the failure to test for QA citation-bracket effects, and (d) the failure to reckon self-archiving OA into the OA Advantage (treating it instead as non-OA). If this had been a JASIST referee report, I would have recommended performing several further analyses taking into account: and making the interpretation of the resultant findings more even-handed, rather than slanting toward the author’s preferred hypothesis that the OA Advantage is due solely or mostly to QB.(1) self-archiving OA References Björk, Bo-Christer; Roosr, Annikki; Lauri, Mari (2008) Global annual volume of peer reviewed scholarly articles and the share available via different open access options. In: Chan, L. & Mornati, S. (Eds) ELPUB2008. Open Scholarship: Authority, Community, and Sustainability in the Age of Web 2.0 - Proceedings of the 12th International Conference on Electronic Publishing Toronto, Canada 25-27 June 2008: pp. 178-186 Brody, T., Harnad, S. and Carr, L. (2006) Earlier Web Usage Statistics as Predictors of Later Citation Impact. Journal of the American Association for Information Science and Technology (JASIST) 57(8): 1060-1072 Craig, I. D., Plume, A. M., McVeigh, M. E., Pringle, J., & Amin, M. (2007). Do Open Access Articles Have Greater Citation Impact? A critical review of the literature. Journal of Informetrics 1(3): 239-248 Davis, P.M. (2008) Author-choice open access publishing in the biological and medical literature: a citation analysis. Journal of the American Society for Information Science and Technology (JASIST) (in press) Davis, P. M., & Fromerth, M. J. (2007). Does the arXiv lead to higher citations and reduced publisher downloads for mathematics articles? Scientometrics 71(2): 203-215. Davis, P. M., Lewenstein, B. V., Simon, D. H., Booth, J. G., & Connolly, M. J. L. (2008). Open access publishing, article downloads and citations: randomised trial. British Medical Journal 337: a586 Hajjem, C. and Harnad, S. (2007a) Citation Advantage For OA Self-Archiving Is Independent of Journal Impact Factor, Article Age, and Number of Co-Authors. Technical Report, Electronics and Computer Science, University of Southampton. Hajjem, C. and Harnad, S. (2007b) The Open Access Citation Advantage: Quality Advantage Or Quality Bias? Technical Report, Electronics and Computer Science, University of Southampton Hajjem, C., Harnad, S. and Gingras, Y. (2005) Ten-Year Cross-Disciplinary Comparison of the Growth of Open Access and How it Increases Research Citation Impact. IEEE Data Engineering Bulletin 28(4) 39-47. Harnad, S. (2007a) Craig et al.'s Review of Studies on the OA Citation Advantage. Open Access Archivangelism 248. Harnad, S. (2007b) Where There's No Access Problem There's No Open Access Advantage Open Access Archivangelism 389 Harnad, S. (2008a) Validating Research Performance Metrics Against Peer Rankings. Ethics in Science and Environmental Politics 8 (11) Harnad, S. (2008b) Davis et al's 1-year Study of Self-Selection Bias: No Self-Archiving Control, No OA Effect, No Conclusion British Medical Journal: Rapid Responses 337 (a568): 199775 Hitchcock, S. (2008) The effect of open access and downloads ('hits') on citation impact: a bibliography of studies Kurtz, M. J., Eichhorn, G., Accomazzi, A., Grant, C., Demleitner, M., Henneken, E., et al. (2005). The effect of use and access on citations. Information Processing and Management 41: 1395-1402 Kurtz, M. J., & Henneken, E. A. (2007). Open Access does not increase citations for research articles from The Astrophysical Journal: Harvard-Smithsonian Center for Astrophysics Lawrence, S. (2001) Free online availability substantially increases a paper's impactNature 31 May 2001 Moed, H. F. (2007). The effect of 'Open Access' upon citation impact: An analysis of ArXiv's Condensed Matter Section. Journal of the American Society for Information Science and Technology 58(13): 2047-2054 Seglen, P. O. (1992). The Skewness of Science. Journal of the American Society for Information Science 43(9): 628-638 Stevan Harnad American Scientist Open Access Forum Friday, August 22. 2008Comhghairdeas, Eire! Ireland's HEA adopts world's 52nd Green OA Self-Archiving MandateIreland's Higher Education Authority (HEA) has adopted the world's 52nd Green OA Self-Archiving mandate (Ireland's second OA mandate; the 27th funder mandate overall) and it chose the optimal mandate model: EURAB's.Comhghairdeas, Eire! The mandate's text is well worth reading (and emulating) in detail. Thursday, August 21. 2008Max Planck Society Pays for Gold OA and Still Fails to Mandate Green OA
One can only leave it to posterity to judge the wisdom of the Max Planck Society in being prepared to divert "central" funds toward funding the publication of (some) MPS research in (some) Gold OA journals (PLoS) without first mandating Green OA self-archiving for all MPS research output.
It is not as if MPS does not have an Institutional Repository (IR): It has EDOC, containing 108,933 records (although it is not clear how many of those are peer-reviewed research articles, how many of them are OA, and what percentage of MPS's current annual research output is deposited and OA). But, despite being a long-time friend of OA, MPS has no Green OA self-archiving mandate. I have been told, repeatedly, that "in Germany one cannot mandate self-archiving," but I do not believe it, not for a moment. This is pure lack of reflection and ingenuity: At the very least, Closed Access deposit in EDOC can certainly be mandated for all MPS published research output as a purely administrative requirement, for internal record-keeping and performance-assessment. This is called the "Immediate Deposit, Optional Access" (IDOA) Mandate. And then the "email eprint request" Button can be added to EDOC to provide almost-OA to all those deposits that the authors don't immediately make OA of their own accord (95% of journals already endorse immediate OA in some form). Then the MPS can go ahead and spend any spare money it may have to fund publication instead of research. This should not be construed as any sort of critique of PLoS, a superb Gold OA publisher, producing superb journals. Nor is it a critique of paying for Gold OA, for those who have the funds. It is a critique of paying for Gold OA without first having mandated Green OA. (For that is rather like an institution offering to pay for its employees' medical insurance for car accidents without first having mandated seat-belts; or, more luridly, offering to pay for the treatment of its employees' secondary-smoke-induced illnesses without first having mandated that the workplace must be smoke-free.) Stevan Harnad American Scientist Open Access Forum 51st Green OA Self-Archiving Mandate: European Union's 7th Framework
The European Commission has now mandated Green OA self-archiving for 20% of its 7th Framework Funding. This is the 51st Green OA Mandate worldwide (and the 26th funder mandate: The European Research Council (ERC), another European research funder, had earlier likewise mandated Green OA.)
See ROARMAP: Institution's/Department's OA Self-Archiving Policy The pilot covers approximately 20% of the FP7 budget and will apply to specific areas of research under the 7th Research Framework Programme (FP7): Health, Energy, Environment, Information and Communication Technologies (Cognitive Systems, Interaction, Robotics), Research Infrastructures (e-Infrastructures), Socio-economic Sciences and Humanities, Science in Society. New grant agreements in the areas covered by the pilot will contain a clause requiring grant recipients to deposit peer reviewed research articles or final manuscripts resulting from their FP7 projects into their institutional or if unavailable a subject-based repository... within six or twelve months after publication, depending on the research area. Tuesday, August 12. 2008Use And Misuse Of Bibliometric Indices In Scholarly Performance Evaluation
Ethics In Science And Environmental Politics (ESEP)
ESEP Theme Section: The Use And Misuse Of Bibliometric Indices In Evaluating Scholarly Performance + accompanying Discussion Forum Editors: Howard I. Browman, Konstantinos I. Stergiou Quantifying the relative performance of individual scholars, groups of scholars, departments, institutions, provinces/states/regions and countries has become an integral part of decision-making over research policy, funding allocations, awarding of grants, faculty hirings, and claims for promotion and tenure. Bibliometric indices (based mainly upon citation counts), such as the h-index and the journal impact factor, are heavily relied upon in such assessments. There is a growing consensus, and a deep concern, that these indices — more-and-more often used as a replacement for the informed judgement of peers — are misunderstood and are, therefore, often misinterpreted and misused. The articles in this ESEP Theme Section present a range of perspectives on these issues. Alternative approaches, tools and metrics that will hopefully lead to a more balanced role for these instruments are presented.Browman HI, Stergiou KI INTRODUCTION: Factors and indices are one thing, deciding who is scholarly, why they are scholarly, and the relative value of their scholarship is something else entirely Saturday, August 9. 2008Estimating Annual Growth in OA Repository Content
This is a useful beginning in the analysis of the growth of Open Access (OA), but it is mostly based on central collections of a variety of different kinds of content.Deblauwe, Francis (2008) OA Academia in Repose: Seven Academic Open-Access Repositories Compared A useful way to benchmark OA progress would be to focus on OA's target content -- this would be, first and foremost, peer-reviewed scientific and scholarly journal articles -- and to indicate, year by year, the proportion of the total annual output of the content-providers, rather than just absolute annual deposit totals. The OA content-providers are universities and research institutions. The denominator for all measures should be the number of articles the institution publishes in a given year, and the numerator should be the number of articles published in that year (full-texts) that are deposited in that institution's Institutional Repository (IR). Just counting total deposits, without specifying the year of publication, the year of deposit, and the total target output of which they are a fraction (as well as making sure they are article full-texts rather than just metadata) is only minimally informative. Absolute totals for Central Repositories (CRs), based on open-ended input from distributed institutions, are even less informative, as there is no indication of the size of the total output, hence what fraction of that has been deposited. If an institution does not know its own annual published articles output -- as is likely, since such record-keeping is one of the many functions that the OA IRs are meant to perform -- an estimate can be derived from the Institute of Scientific Information's (ISI's) annual data for that institution. The estimate is then simple: Determine what proportion of the full-texts of the annual ISI items for that institution are in the IR. (ISI does not index everything, but it probably indexes the most important output, and this ratio is hence an estimate of what proportion of the most important output is being made OA annually by that institution). This calculation could easily be done for the only university IR among the 7 analyzed above, Cambridge University's. It was probably chosen because it is the IR containing the largest total number of items (see ROAR) and one of the few IRs with a total item count big enough to be comparable with the total counts of the multi-institutional collections such as Arxiv. However, it is unclear what proportion of the items in Cambridge's IR are the full-texts of journal articles -- and what percentage of Cambridge's annual journal article output this represents. CERN is an institution, but not a multidisciplinary university: High Energy Physics only. CERN has, however, done the recommended estimate of its annual OA growth in 2006 and found its IR "Three Quarters Full and Counting. http://library.cern.ch/HEPLW/12/papers/2/ CERN, moreover, is one of the 25 institutions, universities and departments that have mandated deposit in their IR. Those are also the IRs that are growing the fastest. (Deblauwe notes that"Resources... remain a big issue, e.g., in 2006, after the initially-funded three years, DSpace@Cambridge's growth rate slowed down due to underestimation of the expenses and difficulty of scaling up." I would suggest that what Cambridge needs is not more resources for the IR but a deposit mandate, like Southampton's, QUT's, Minho's, CERN's, Harvard's, Stanford's, and the rest of the 25 mandates to date: See ROARMAP.) Stevan Harnad American Scientist Open Access Forum Tuesday, August 5. 2008Self-Promotion Bias in Arxiv Deposit ListingsThis interesting paper reports that in the physics Arxiv (astrophysics sector), where virtually all current articles in astrophysics are OA in preprint form (with no postprint OA problem in astrophysics either) several factors significantly influence citation counts:Dietrich, JP (2008) Disentangling visibility and self-promotion bias in the arXiv: astro-ph positional citation effect. PUBLICATIONS OF THE ASTRONOMICAL SOCIETY OF THE PACIFIC 120 (869): 801-804 (1) Arxiv provides a daily list of articles deposited. The articles higher on that list are more cited than the articles lower on that list.The authors rightly point out that in a high-output field like astrophysics, visibility is an important factor in usage and citations, and authors need alerting and navigation aids based on importance, relevance and quality, rather than on random timing and author self-promotion biasses. I would add that in fields -- whether high- or low-output -- that, unlike astrophysics, are not yet OA, accessibility itself probably has much the same sort of effect on citations that visibility does in an OA field like astrophysics. (Even maximized visibility cannot make articles accessible to those who cannot afford access to the full-text.) Stevan Harnad American Scientist Open Access Forum Monday, August 4. 2008Are Online and Free Online Access Broadening or Narrowing Research?
Evans, James A. (2008) Electronic Publication and the Narrowing of Science and Scholarship Science 321(5887): 395-399 DOI:10.1126/science.1150473Evans found that as more and more journal issues are becoming accessible online (mostly only the older back-issues for free), journals are not being cited less overall, but citations are narrowing down to fewer articles, cited more.Excerpt: "[Based on] a database of 34 million articles, their citations (1945 to 2005), and online availability (1998 to 2005),... as more journal issues came online, the articles [cited] tended to be more recent, fewer journals and articles were cited, and more of those citations were to fewer journals and articles... [B]rowsing of print archives may have [led] scientists and scholars to [use more] past and present scholarship. Searching online... may accelerate consensus and narrow the range of findings and ideas built upon." In one of the few fields where this can be and has been analyzed thoroughly, astrophysics, which effectively has 100% Open Access (OA) (free online access) already, Michael Kurtz too found that with free online access to everything, reference lists became (a little) shorter, not longer, i.e., people are citing (somewhat) fewer papers, not more, when everything is accessible to them free online. The following seems a plausible explanation: Before OA, researchers cited what they could afford to access, and that was not necessarily all the best work, so they could not be optimally selective for quality, importance and relevance. (Sometimes -- dare one say it? -- they may even have resorted to citing "blind," going by just the title and abstract, which they could afford, but not the full text, to which they had no subscription.) In contrast, when everything becomes accessible, researchers can be more selective and can cite only what is most relevant, important and of high quality. (It has been true all along that about 80-90% of citations go to the top 10-20% of articles. Now that the top 10-20% (along with everything else in astrophysics), is accessible to everyone, everyone can cite it, and cull out the less relevant or important 80-90%. This is not to say that OA does not also generate some extra citations for lesser articles too; but the OA citation advantage is bigger, the better the article -- the "quality advantage" -- (and perhaps most articles are not that good!). Since the majority of published articles are uncited (or only self-cited), there is probably a lot published that no amount of exposure and access can render worth citing! (I think there may also exist some studies [independent of OA] on "like citing like" -- i.e., articles tending to be cited more at their own "quality" level rather than a higher one. [Simplistically, this means within their own citation bracket, rather than a higher one.] If true, this too could probably be analyzed from an OA standpoint.) But the trouble is that apart from astrophysics and high energy physics, no other field has anywhere near 100% OA: It's closer to 15% in other fields. So aside from a (slightly negative) global correlation (between the growth of OA and the average length of the reference list), the effect of OA cannot be very deeply analyzed in most fields yet. In addition, insofar as OA is concerned, much of the Evans effect seems to be based on "legacy OA," in which it is the older literature that is gradually being made accessible online or freely accessible online, after a long non-online, non-free interval. Fields differ in their speed of uptake and their citation latencies. In physics, which has a rapid turnaround time, there is already a tendency to cite recent work more, and OA is making the turnaround time even faster. In longer-latency fields, the picture may differ. For the legacy-OA effect especially, it is important to sort fields by their citation turnaround times; otherwise there can be biases (e.g. if short- or long-latency fields differ in the degree to which they do legacy OA archiving). If I had to choose between the explanation of the Evans effect as a recency/bandwagon effect, as Evans interprets it, or as an increased overall quality/selectivity effect, I'd choose the latter (though I don't doubt there is a bandwagon effect too). And that is even without going on to point out that Tenopir & King, Gingras and others have shown that -- with or without OA -- there is still a good deal of usage and citation of the legacy literature (though it differs from field to field). I wouldn't set much store by "skimming serendipity" (the discovery of adjacent work while skimming through print issues), since online search and retrieval has at least as much scope for serendipity. (And one would expect more likelihood of a bandwagon effect without OA, where authors may tend to cite already cited but inaccessible references "cite unseen.") Are online and free online access broadening or narrowing research? They are broadening it by making all of it accessible to all researchers, focusing it on the best rather than merely the accessible, and accelerating it. Stevan Harnad American Scientist Open Access Forum Saturday, August 2. 2008Open Access: "Gratis" and "Libre"
Re-posted from Peter Suber's Open Access News. (This is to register 100% agreement on this definition of "Gratis" and "Libre" OA, and on the new choice of terms.)
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