Self-Archive Institutionally, Harvest Centrally

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Comments invited -- but please don't post them here but in the Higher EDucation Development Association (HEDDA) blog.

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In the Hedda Blog, Chris Maloney (Contractor for PubMed Central) asked:

"Assuming the article is in the biomedical field, can authors simultaneously put a copy of their manuscript in their institution’s repository, and upload it to PMC through the NIHMS? Or does the article have to be funded by the NIH for them to do this?… The reason I ask question #2 is that I am wondering if just putting a manuscript [in]to an IR is enough to truly make the article visible and accessible. Just because something’s on the web doesn’t mean it will be found. Just because something’s indexed by Google doesn’t mean it will have high rank in their search results. Putting a manuscript on PMC, through NIHMS or other channels, means that it would be indexed in PubMed, which would make it more accessible."

This an extremely important practical issue, and at the moment it is not being properly implemented.

The short answer is, yes, a document deposited in the author's institutional repository (IR) can be uploaded to PMC through NIHMS, regardless of whether NIH has funded the research (and, a fortiori, regardless of whether NIH has funded extra "gold" OA publication fees).

But those extra author self-archiving steps should not be necessary! The reason it became apparent that green OA self-archiving mandates (from both institutions and funders) would be necessary was that spontaneous, unmandated self-archiving rates remain low (about 20%), even when recommended or encouraged by institutions and funders. That's why the first NIH OA policy, a request, failed until it was upgraded to a requirement.

But the practical implementation of the NIH mandate was still short-sighted: It required direct deposit in PMC, and allowed this to be done by either the author or the publisher. The result was not only (1) uncertainty about who needed to deposit what, when, not only (2) a partial reliance on a 3rd party other than the fundee, not bound by the grant, namely, the publisher, to fulfill the conditions of a grant to the fundee, but it also (3) imposed a double burden on fundees if their own institutions were to mandate self-archiving too: They had to deposit in their own IRs and also in PMC.

This did not help either with encouraging more institutions to adopt self-archiving mandates (even though institutions are the universal providers of all research, funded and unfunded, across all disciplines) nor with encouraging authors, already sluggish about self-archiving at all, to comply with self-archiving mandates (since they might be faced with having to deposit the same paper many times).

Yet in reality, the problem is merely a formal one, not a technical one. Software (e.g., SWORD) can import and export the contents of one repository to another automatically. More important: There is no need for institutional authors ever to have to self-archive directly in an institution-external (central) repository like PMC: The contents of IRs are all OAI-compliant and harvestable automatically by whatever central repositories might want them.

So institutional and funder mandates need to be collaborative and convergent, not competitive and divergent, as some (including NIH's) are now. And the convergence needs to be on institution-internal deposit, followed by central harvesting (e.g. to PMC) where desired -- certainly not the reverse.

"Deposit institutionally, harvest centrally." This not only encourages institutions to adopt their own mandates, to complement funder mandates and cover the entire OA target corpus, but it also puts institutions in a position to monitor and ensure compliance with funder mandates. (Ensuring that all funder grant fulfillment conditions are met is something that institutions are always very eager to do!)

(The visibility/accessibility worry is, I think, a red herring: OAI-compliant institutional repositories are harvested by Google, Google Scholar, BASE. citeseerx and many other search engines, including OAI-specific ones. And besides, IR metadata and documents can also be harvested into central repositories like PMC and UK-PMC. The only real factor in visibility and accessibility is whether or not an article has been made green OA at all! Where it is made OA matters little, and it matters less and less as more and more is made OA.)

See:

"How to Integrate University and Funder Open Access Mandates"

Summary: Research funder open-access mandates (such as NIH's) and university open-access mandates (such as Harvard's) are complementary. There is a simple way to integrate them to make them synergistic and mutually reinforcing:
      Universities' own Institutional Repositories (IRs) are the natural locus for the direct deposit of their own research output: Universities (and research institutions) are the universal research providers of all research (funded and unfunded, in all fields) and have a direct interest in archiving, monitoring, measuring, evaluating, and showcasing their own research assets -- as well as in maximizing their uptake, usage and impact.
      Both universities and funders should accordingly mandate deposit of all peer-reviewed final drafts (postprints), in each author's own university IR, immediately upon acceptance for publication, for institutional and funder record-keeping purposes. Access to that immediate postprint deposit in the author's university IR may be set immediately as Open Access if copyright conditions allow; otherwise access can be set as Closed Access, pending copyright negotiations or embargoes. All the rest of the conditions described by universities and funders should accordingly apply only to the timing and copyright conditions for setting open access to those deposits, not to the depositing itself, its locus or its timing.
      As a result, (1) there will be a common deposit locus for all research output worldwide; (2) university mandates will reinforce and monitor compliance with funder mandates; (3) funder mandates will reinforce university mandates; (4) legal details concerning open-access provision, copyright and embargoes will be applied independently of deposit itself, on a case by case basis, according to the conditions of each mandate; (5) opt-outs will apply only to copyright negotiations, not to deposit itself, nor its timing; and (6) any central OA repositories can then harvest the postprints from the authors' IRs under the agreed conditions at the agreed time, if they wish.

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Comments invited -- but please don't post them here but in the Higher EDucation Development Association (HEDDA) blog.

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